rs27425708 SNP Detail

Summary

• ID
  rs27425708
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121978593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGGCGGGA GCCCCTAGAC TCCCTGAGCG CAAAAGGAGG
  GTGGGGCTGC CTGGAAAGTG CAGGGTGGAG GGCTATGGGC ACGCGGAAGC TGAGCCCCGA
  M
  CACGGGAAGT CAGACCGCCG CTGCGCAGCT TCATTTGCAC TCGCAGAGAG GCTCGATCCA
  ACCGAAGTCG AGAGAAAATG GGCTTGGGTC CCAGACTCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37644528	NES09020282	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	A	C	A	C	A	C	C		C	C	C	C		C
ss147410012	ENSMUSSNP2429873	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss320487205	CHEV_2_121973848	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27425708					SNP	C	A	C	A	C	A	C	A	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37644528	NES09020282	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121978593 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	Intron
Cpgi12169	CpG island 12169	within coordinates
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	Intron
Rr397252	regulatory region 397252	383 bp downstream
Rr563912	regulatory region 563912	416 bp distal
Rr563913	regulatory region 563913	within coordinates
Tssr19804	transcription start site region 19804	618 bp downstream
Tssr19805	transcription start site region 19805	416 bp downstream
Tssr19806	transcription start site region 19806	384 bp downstream
Tssr19807	transcription start site region 19807	1052 bp upstream
Tssr19808	transcription start site region 19808	1105 bp upstream
Tssr19809	transcription start site region 19809	1449 bp upstream
Tssr25953	transcription start site region 25953	1155 bp upstream
Tssr25954	transcription start site region 25954	592 bp upstream