rs27425712 SNP Detail

Summary

• ID
  rs27425712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121978072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCC TTTGTAACCT AGTTCAGCAT
  Y
  AACAGCTAGG AGACTGGTGA CGACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37644532	NES09020274	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C	C	C	T	C	C	T	T	C	T
ss147409993	ENSMUSSNP2799230	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27425712					SNP	T	C	T	C	T	C	C	C	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37644532	NES09020274	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121978072 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	96 bp upstream
Cpgi12169	CpG island 12169	1 bp proximal
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	Intron
Rr397252	regulatory region 397252	within coordinates
Rr563912	regulatory region 563912	within coordinates
Rr563913	regulatory region 563913	106 bp proximal
Tssr19804	transcription start site region 19804	97 bp downstream
Tssr19805	transcription start site region 19805	89 bp upstream
Tssr19806	transcription start site region 19806	131 bp upstream
Tssr19807	transcription start site region 19807	1573 bp upstream
Tssr19808	transcription start site region 19808	1626 bp upstream
Tssr19809	transcription start site region 19809	1970 bp upstream
Tssr25953	transcription start site region 25953	634 bp upstream
Tssr25954	transcription start site region 25954	71 bp upstream