rs27425713 SNP Detail

Summary

• ID
  rs27425713
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121977589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGG AAACCCAGCT AAGCCATTGT
  Y
  CTTCCCCAAA ACCCATGGAC AGAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37644533	NES09020272	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	C	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27425713					SNP	C	T	C	T	C	C	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37644533	NES09020272	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121977589 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	579 bp upstream
Cpgi12169	CpG island 12169	484 bp proximal
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	Intron
Rr397252	regulatory region 397252	320 bp upstream
Rr563912	regulatory region 563912	88 bp proximal
Rr563913	regulatory region 563913	589 bp proximal
Tssr19804	transcription start site region 19804	367 bp upstream
Tssr19805	transcription start site region 19805	572 bp upstream
Tssr19806	transcription start site region 19806	614 bp upstream
Tssr25953	transcription start site region 25953	151 bp upstream
Tssr25954	transcription start site region 25954	394 bp downstream