rs27425715 SNP Detail

Summary

• ID
  rs27425715
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121976656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGC CTCCTCTCAG TTTCCCCACG
  R
  TGACTTATTT CTTACTGGTT TTAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37644535	NES09020268	PERLEGEN	MM_PANEL2	f	SNP	G			G	G	G		G	G	A		A	G	A		G
ss45319121	mCV24434387	ABI	CRAMUS_MOUSE	f	SNP		G	G				A		G
ss147409983	ENSMUSSNP4821623	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss320487200	CHEV_2_121971911	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27425715					SNP	G	G	G	G	G	G	A	G	G	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37644535	NES09020268	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121976656 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	1512 bp upstream
Cpgi12169	CpG island 12169	1417 bp proximal
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	Intron
Rr397252	regulatory region 397252	1253 bp upstream
Rr563912	regulatory region 563912	1021 bp proximal
Rr563913	regulatory region 563913	1522 bp proximal
Tssr19804	transcription start site region 19804	1300 bp upstream
Tssr19805	transcription start site region 19805	1505 bp upstream
Tssr19806	transcription start site region 19806	1547 bp upstream
Tssr25953	transcription start site region 25953	779 bp downstream
Tssr25954	transcription start site region 25954	1327 bp downstream