rs27430494 SNP Detail

Summary

• ID
  rs27430494
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:86819810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAATGTAC TGGAAGGTAT
  GTGTTCATGC TCTGGTGAAC TCTTGTTGTG CTTAAAGCCA TCAGTTCTAA CAGTCATTTT
  ATCCCTGCAT TCAATTACTT ATTTTCATTT TAAATTCAAT GAAAATCAAA GTTGAGGATC
  AAGAGTAGTA GTATAAGCTG GAAACTTGGT AGACTGTCGG AACCTGAAAG TCATCCTCAC
  R
  ATTATGAGAA TAGTTTGAAG CACACGAGAC TGTTAAAACA AAAAAAGGAA ACAAATTGAG
  AAGGTAAAAT TTTCTCTTAC ATTCAAGATA ATAAAACATT CTGTTAGTAA CAGTGCACAG
  GAATCAAGTG TAGATATCTA GGTCTTTCAG CTATTTTGTA AAATTATTTG CTATAATCTT
  CTCTCCTATA GAATGTGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37611814	NES09106457	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27430494					SNP	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37611814	NES09106457	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:86819810 () rs orientation: forward

Symbol	Name	Function Class
Or5t16	olfactory receptor family 5 subfamily T member 16	292 bp upstream