rs27430495 SNP Detail

Summary

• ID
  rs27430495
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:86819805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATACTGAA TGTACTGGAA
  GGTATGTGTT CATGCTCTGG TGAACTCTTG TTGTGCTTAA AGCCATCAGT TCTAACAGTC
  ATTTTATCCC TGCATTCAAT TACTTATTTT CATTTTAAAT TCAATGAAAA TCAAAGTTGA
  GGATCAAGAG TAGTAGTATA AGCTGGAAAC TTGGTAGACT GTCGGAACCT GAAAGTCATC
  Y
  TCACAATTAT GAGAATAGTT TGAAGCACAC GAGACTGTTA AAACAAAAAA AGGAAACAAA
  TTGAGAAGGT AAAATTTTCT CTTACATTCA AGATAATAAA ACATTCTGTT AGTAACAGTG
  CACAGGAATC AAGTGTAGAT ATCTAGGTCT TTCAGCTATT TTGTAAAATT ATTTGCTATA
  ATCTTCTCTC CTATAGAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37611815	NES09106456	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27430495					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37611815	NES09106456	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:86819805 () rs orientation: forward

Symbol	Name	Function Class
Or5t16	olfactory receptor family 5 subfamily T member 16	287 bp upstream