rs27430499 SNP Detail

Summary

• ID
  rs27430499
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:86818824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGC CACATGTAGA GAACACTTTT
  K
  GCCTCCCCTC AGCAGAATGC ATCTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37611820	NES09106451	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	T	T		T	G	T	T		T	G	T		T
ss45330562	mCV25121770	ABI	CRAMUS_MOUSE	f	SNP	T	T	G					T		G
ss146867572	ENSMUSSNP3876286	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							G
ss320379628	CHEV_2_86828637	CHEVERUD	SCREENING_POP	f	SNP													G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27430499					SNP	T	T	G	G	G	T	T	T	T	G	T	T	G	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37611820	NES09106451	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:86818824 () rs orientation: forward

Symbol	Name	Function Class
Or5t16	olfactory receptor family 5 subfamily T member 16	within coordinates