rs27434923 SNP Detail

Summary

• ID
  rs27434923
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126838744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGAACTAA CAACAAACGC CAAAATAAAA AAGAAAGAAG
  CCACAAAATA GAGGATAGAA GATAATAGTC ATTAACTTAT CCAGAGACAG AGTCTTTGAA
  R
  GCAAGCCCCA CATATTCTGT AGAAAAACAA GGCCTTCCTA CTGTTTATTA TTGAGTACCG
  CACTTACAAA CGGTCTATTT TGGTTTACTT CCTCTTTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37630759	NES08997355	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A		G	A	G	G	A	G	G	G
ss45298448	mCV23904739	ABI	CRAMUS_MOUSE	f	SNP							G		A
ss147516209	ENSMUSSNP4773698	ENSEMBL	ENSEMBL_Sanger	f	SNP									A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27434923					SNP	G	G	G	G	G	A	G	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37630759	NES08997355	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126838744 () rs orientation: forward

Symbol	Name	Function Class
Rr564431	regulatory region 564431	within coordinates