rs27434926 SNP Detail

Summary

• ID
  rs27434926
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126838113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTTCTGA GTTCGAGGCC
  AGCCTGGTCT ACAAAGTGAG CTCCAGGACA GCCAGAGATA TAAAGAGAAA CCCTGTCTCG
  AAAAACCAAA AAAAAAAAAA AAAAAAAAAT CTAATACACT CTTACAAGAA ATTTCCACAG
  ACACACATAC TACCAATGTA CCAATACTAG AGAGTCAGCA TAAGTTACCA AGAGGATTTG
  K
  AGCTGTGTGG ATCTTGATCT GATCTAATCT AGGTATTTCC AAATGTTACG GAAGTATGCG
  TGAGAGCATA AGAAACTCTA TCTGGGGCTA GTGGATGGCT CACTGGGCAA GAGCACTGAC
  TGCTCTTCTG AAGGTCCTGA GTTCAAATTC CAGCAATCAC ATGGTGGCTC ACAACTACCC
  GTAATGAGAT TTGACACCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37630762	NES08997352	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	G	T	T	T	T	T		T	T	T	T
ss147516184	ENSMUSSNP1202938	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						T
ss320498726	CHEV_2_126821929	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27434926					SNP	T	T	G	T	G	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37630762	NES08997352	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126838113 () rs orientation: forward

Symbol	Name	Function Class
Rr564430	regulatory region 564430	1427 bp distal
Rr564431	regulatory region 564431	476 bp proximal