rs27434927 SNP Detail

Summary

• ID
  rs27434927
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126838089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACTCGGG AGGCAGAGGC
  AGACGGATTT CTGAGTTCGA GGCCAGCCTG GTCTACAAAG TGAGCTCCAG GACAGCCAGA
  GATATAAAGA GAAACCCTGT CTCGAAAAAC CAAAAAAAAA AAAAAAAAAA AAATCTAATA
  CACTCTTACA AGAAATTTCC ACAGACACAC ATACTACCAA TGTACCAATA CTAGAGAGTC
  W
  GCATAAGTTA CCAAGAGGAT TTGTAGCTGT GTGGATCTTG ATCTGATCTA ATCTAGGTAT
  TTCCAAATGT TACGGAAGTA TGCGTGAGAG CATAAGAAAC TCTATCTGGG GCTAGTGGAT
  GGCTCACTGG GCAAGAGCAC TGACTGCTCT TCTGAAGGTC CTGAGTTCAA ATTCCAGCAA
  TCACATGGTG GCTCACAACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37630763	NES08997351	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27434927					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37630763	NES08997351	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126838089 () rs orientation: forward

Symbol	Name	Function Class
Rr564430	regulatory region 564430	1403 bp distal
Rr564431	regulatory region 564431	500 bp proximal