rs27434928 SNP Detail

Summary

• ID
  rs27434928
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126838075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCCTTTAA TCCCAGCACT
  CGGGAGGCAG AGGCAGACGG ATTTCTGAGT TCGAGGCCAG CCTGGTCTAC AAAGTGAGCT
  CCAGGACAGC CAGAGATATA AAGAGAAACC CTGTCTCGAA AAACCAAAAA AAAAAAAAAA
  AAAAAAATCT AATACACTCT TACAAGAAAT TTCCACAGAC ACACATACTA CCAATGTACC
  R
  ATACTAGAGA GTCAGCATAA GTTACCAAGA GGATTTGTAG CTGTGTGGAT CTTGATCTGA
  TCTAATCTAG GTATTTCCAA ATGTTACGGA AGTATGCGTG AGAGCATAAG AAACTCTATC
  TGGGGCTAGT GGATGGCTCA CTGGGCAAGA GCACTGACTG CTCTTCTGAA GGTCCTGAGT
  TCAAATTCCA GCAATCACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37630764	NES08997350	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	A	A	A	A	A		A	A	A
ss147516178	ENSMUSSNP2890372	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
ss320498725	CHEV_2_126821891	CHEVERUD	SCREENING_POP	f	SNP												A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27434928					SNP	A	A	G	A	G	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37630764	NES08997350	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126838075 () rs orientation: forward

Symbol	Name	Function Class
Rr564430	regulatory region 564430	1389 bp distal
Rr564431	regulatory region 564431	514 bp proximal