rs27434930 SNP Detail

Summary

• ID
  rs27434930
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126837164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCAAATGC TTTTATGGTT
  CCATTTCGGG TGGAGCCAAT TAACTATTCA GTTAATAGCC ACACTTTATA GCTAAGGTAA
  TTGAAAAGCC ACATCACACT GGCTGATTTT TTTTTTTTTT TTTTTTTTTT TTGCCACTCC
  AGCTGCTTTC AAGAGCCCAC ATTGATTTCT GCCTAGATAG CTTCCAGAAT TTCTGGGTCA
  M
  TATAAAAATT CTTTCTCTCA TTACTTGTTA CTAATGTGTG AAGAGTCCTA ACAGTAGCAA
  CAAAACTTGT AAGTAAACCC TGGCGAGTGT AATAAATCGT GTAGGACTAG AAAAATGCCT
  CAGTGGGTAA AGTGCCCATC ACCCAAGTGT GAGGACCAGA TTTCAATCCC CAATGCCCAT
  GTGAGCCAGA CATGATGGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37630766	NES08997454	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27434930					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37630766	NES08997454	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126837164 () rs orientation: forward

Symbol	Name	Function Class
Rr564430	regulatory region 564430	478 bp distal
Rr564431	regulatory region 564431	1425 bp proximal