rs27435076 SNP Detail

Summary

• ID
  rs27435076
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126776767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAGTGCT GGCCTGGACC
  ACGGCTCCTG ACTGCAGTTT CAGCATCACC ATCCAAACCT ATTGAATCCG AGAATCAGAG
  AATGAGCATT CCAGAGACCT CATACTGCTA CCTCAGTTTA GCTCAAATAA ATCTTACTCC
  TGACCTTCTA AGTTGTCTCA GGGGAACATT TATACTCTTA AGAGCTTCTT GTTGGATGAG
  R
  ATTCCTAAAA TAGGACACGA AAAAAGGAAA AACTATACAA CAATAAAATC AAATTCACTT
  CACCAAAATA AAAACCTCTG TTCTTTGGAA GATATGTTTT TTAAATATTT ATTTGTGTGT
  GTACTTTCAT AGACACCTAC ATGAGCTTAT GTCTACTATG TGTGTGCAGG TGTCTACAGA
  GATCAAAAGA GGACACCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37630916	NES08999159	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	A	A	A	A	A		A	A	A	A		G
ss147514394	ENSMUSSNP1020185	ENSEMBL	ENSEMBL_Sanger	f	SNP							A
ss320498588	CHEV_2_126760583	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27435076					SNP	A	G	G	A	A	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37630916	NES08999159	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126776767 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12210	CpG island 12210	1443 bp distal
Gm75308	predicted gene, 75308	within coordinates
Rr564422	regulatory region 564422	1760 bp distal
Rr564423	regulatory region 564423	1771 bp distal
Rr564424	regulatory region 564424	1623 bp distal
Rr564425	regulatory region 564425	1122 bp distal
Sppl2a	signal peptide peptidase like 2A	1612 bp upstream
Tssr26085	transcription start site region 26085	1757 bp upstream
Tssr26086	transcription start site region 26086	1714 bp upstream
Tssr26087	transcription start site region 26087	1683 bp upstream
Tssr26088	transcription start site region 26088	1620 bp upstream
Tssr26089	transcription start site region 26089	1606 bp upstream
Tssr26090	transcription start site region 26090	967 bp upstream