rs27435077 SNP Detail

Summary

• ID
  rs27435077
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126776576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAAGCATT GTTGCATTTA
  CTCTCAGCCA CTTTTAGAAT CCTTCTAGGA CACTGATGTT TAAGCTAATC TCCCCTTTCC
  ACTGGGATCC TAGATACTTG CTCATCTGAT GAGAGCAATA TATCTGGATT TTAAAAACAT
  TTCCAGATTT AATATACAGC CAAGCTTAAA AACCTTTCAT TATTTAGTGT TTCAGAGTGC
  Y
  GGCCTGGACC ACGGCTCCTG ACTGCAGTTT CAGCATCACC ATCCAAACCT ATTGAATCCG
  AGAATCAGAG AATGAGCATT CCAGAGACCT CATACTGCTA CCTCAGTTTA GCTCAAATAA
  ATCTTACTCC TGACCTTCTA AGTTGTCTCA GGGGAACATT TATACTCTTA AGAGCTTCTT
  GTTGGATGAG AATTCCTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37630918	NES08999156	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	T	T	T	T	T		T	T	T	T		C
ss147514375	ENSMUSSNP5802889	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss320498584	CHEV_2_126760392	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27435077					SNP	T	C	T	C	T	T	T	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37630918	NES08999156	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126776576 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12210	CpG island 12210	1252 bp distal
Gm75308	predicted gene, 75308	within coordinates
Rr564422	regulatory region 564422	1569 bp distal
Rr564423	regulatory region 564423	1580 bp distal
Rr564424	regulatory region 564424	1432 bp distal
Rr564425	regulatory region 564425	931 bp distal
Sppl2a	signal peptide peptidase like 2A	1421 bp upstream
Tssr26085	transcription start site region 26085	1566 bp upstream
Tssr26086	transcription start site region 26086	1523 bp upstream
Tssr26087	transcription start site region 26087	1492 bp upstream
Tssr26088	transcription start site region 26088	1429 bp upstream
Tssr26089	transcription start site region 26089	1415 bp upstream
Tssr26090	transcription start site region 26090	776 bp upstream