rs27435078 SNP Detail

Summary

• ID
  rs27435078
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126775944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTGTTGA CTGCTGTGTC
  CTTACACACA GAATATCCAG TGTATACTAG GTTGTCAAAT ATTTGTTGGA TGACTATTTA
  ATACCAAACA CTGAATAGGA CAGTGTTCCT GTTATCCTAA AGGAGGGACA CAGCAAGGAC
  TACAGATGTG TGAGCAAACA CTGTTACAAA GCAACCTTTC ACAAGGAACT CCACAAGGAT
  M
  CAAGGGAGGT AAAAATAGGG CACCAGGAAG AGAAAAAAAA AAAAAAAAAA AAAAAAAAAA
  CACCAGCCCT AGCTGAGTAT AACTGACTAT TACCTTCTGT GCAAGTTAAT TTCAGCTAGG
  CAAAGAGGAA GGAAGCATTA GTCTGAAAGC CAAGGGAGGC AACTACAGAA CTACAGAACT
  ACAGAACTGG ACCTTGGCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37630919	NES08999154	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27435078					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37630919	NES08999154	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126775944 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12210	CpG island 12210	620 bp distal
Gm75308	predicted gene, 75308	within coordinates
Rr564422	regulatory region 564422	937 bp distal
Rr564423	regulatory region 564423	948 bp distal
Rr564424	regulatory region 564424	800 bp distal
Rr564425	regulatory region 564425	299 bp distal
Sppl2a	signal peptide peptidase like 2A	789 bp upstream
Tssr26085	transcription start site region 26085	934 bp upstream
Tssr26086	transcription start site region 26086	891 bp upstream
Tssr26087	transcription start site region 26087	860 bp upstream
Tssr26088	transcription start site region 26088	797 bp upstream
Tssr26089	transcription start site region 26089	783 bp upstream
Tssr26090	transcription start site region 26090	144 bp upstream