rs27435080 SNP Detail

Summary

• ID
  rs27435080
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126775217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGGCCGCCG CCCATTCCAA GCCACTGGAG CTTCGGGTTT
  CAGTTTCCTT TCTGGCCTCT GCCACGTAGC CTCGGGGCGA TCTTCGTAAA TACGGAACCC
  R
  GACGAGGCTC CTCTCCACAC TTGGCAGCAC AAATCAAAAC TCTTCCTCTG CTGCTAAGTT
  TACGTCACCT CACCCTGTTT TCTCTGTCCT TGGTTTCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37630921	NES08999236	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G		G	G	A	A	G	A	A	G	A
ss45237161	mCV22628471	ABI	CRAMUS_MOUSE	f	SNP	A						A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27435080					SNP	A	A	A	A	A	G	A	G	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37630921	NES08999236	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126775217 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			within coordinates
Gm75308	predicted gene, 75308			within coordinates
Rr564422	regulatory region 564422			210 bp distal
Rr564423	regulatory region 564423			221 bp distal
Rr564424	regulatory region 564424			73 bp distal
Rr564425	regulatory region 564425			within coordinates
Sppl2a	signal peptide peptidase like 2A			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr26084	transcription start site region 26084			1391 bp upstream
Tssr26085	transcription start site region 26085			207 bp upstream
Tssr26086	transcription start site region 26086			164 bp upstream
Tssr26087	transcription start site region 26087			133 bp upstream
Tssr26088	transcription start site region 26088			70 bp upstream
Tssr26089	transcription start site region 26089			56 bp upstream
Tssr26090	transcription start site region 26090			570 bp downstream