rs27435081 SNP Detail

Summary

• ID
  rs27435081
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126774904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCAGGG TAGAAGGAGA
  GGAAGGGGGA GGTAGGGAAG GAGGAGGGAT GAGGGAAATC CGGAGGAGGT TAGAGGGAAA
  GGAAGGGATG GAGGGGGAGG GGGAGGAAGC GGGAGGAAGG GGAGGGAAAA GCGGAGGGGA
  GGGGAGGGGA GTGCGGCTCT CACCAGTCCG AGCAGGCAGC TCCAGAGCAG GGCAGCCGCG
  R
  GAGCGTGCAG CGAGTGCAGC AGCCCCATCC CACGGGCGGG CAGCTAGGCT CAGGCTGCGC
  TGGCGGCACC CGGACCTCTA GGGTGCAGCC CCGACTTCCT CTTCCGGTCC CTCCCGCGAA
  ACGCTAGGCC GGGACTCTGT GGGTACTGTC AGCTCCTGGC AGAGCCGTTT TAGCTGCGTA
  AATCCTGGGT TCTCGTTCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37630922	NES08999234	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	G	G	G	G	G	G	G	G
ss45211606	mCV22628470	ABI	CRAMUS_MOUSE	f	SNP		A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27435081					SNP	G	A	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37630922	NES08999234	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126774904 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			within coordinates
Gm75308	predicted gene, 75308			within coordinates
Rr564422	regulatory region 564422			within coordinates
Rr564423	regulatory region 564423			71 bp proximal
Rr564424	regulatory region 564424			104 bp proximal
Rr564425	regulatory region 564425			241 bp proximal
Sppl2a	signal peptide peptidase like 2A			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr26084	transcription start site region 26084			1078 bp upstream
Tssr26085	transcription start site region 26085			9 bp downstream
Tssr26086	transcription start site region 26086			138 bp downstream
Tssr26087	transcription start site region 26087			169 bp downstream
Tssr26088	transcription start site region 26088			231 bp downstream
Tssr26089	transcription start site region 26089			245 bp downstream
Tssr26090	transcription start site region 26090			883 bp downstream