rs27435082 SNP Detail

Summary

• ID
  rs27435082
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126774293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAACATT ATTTCAGCAA
  ATATGGGTAT GTGAGCGCAT ATTTGTTATT TTTTTCTCAA CCAGACTTTG ACCCTTTTAG
  ACGTCAAACT ATTCAAACCT CTCATTTCCC CTTTAAAGGT ATTTTAAAGT ATACCTATAT
  GAAAACAAAA GCATAATACA AATCCCATAG TATAATCACA TGTACCTTAC ATAGAAGGCA
  Y
  TATCTGGGAG TGAAAGGAAA GTATATAGAT ATTCATATGG CTATAGAGAG AAATGTATGT
  GAGCGCAGTC AACAAAAGAG CAGGCCAGAA CGCTAACACC TGGAACCCTG TTCACACCGG
  CCCCTCCATC CGCCTTTTTC TAGGCAAAAG GCAGCAGTAA GATTGGGCTA CACAGAGAAG
  CACAGAAGTG AATTCTTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37630924	NES08999275	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27435082					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37630924	NES08999275	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126774293 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			394 bp proximal
Gm75308	predicted gene, 75308			320 bp upstream
Rr564422	regulatory region 564422			within coordinates
Rr564423	regulatory region 564423			682 bp proximal
Rr564424	regulatory region 564424			715 bp proximal
Rr564425	regulatory region 564425			852 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				Noncoding-Transcript-Variant
Tssr26084	transcription start site region 26084			467 bp upstream
Tssr26085	transcription start site region 26085			620 bp downstream
Tssr26086	transcription start site region 26086			749 bp downstream
Tssr26087	transcription start site region 26087			780 bp downstream
Tssr26088	transcription start site region 26088			842 bp downstream
Tssr26089	transcription start site region 26089			856 bp downstream
Tssr26090	transcription start site region 26090			1494 bp downstream