rs27435083 SNP Detail

Summary

• ID
  rs27435083
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126773921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTAAAAAA AAAAAAAAAA AAAAAACTGT TTGGGGCTTA
  AACCTTCTCC ATGACCTTTT CAAGCCCAGA GTGACAAAGC AGTCTTTCAG AGAAGTGATG
  K
  TTTTTAAGTA ATAACTACAT ACACAGTTTA CACAACAGTG TGCAAACAAT ACCGATACAA
  ATTTCCCAAC ATCAAATGTC AGAAAAGAAA GTGAACAGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37630925	NES08999274	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	T	G	T	G	G	T	G
ss45382123	mCV22628437	ABI	CRAMUS_MOUSE	f	SNP		G	G					T
ss147514342	ENSMUSSNP7237882	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27435083					SNP	G	G	G	G	G	G	G	T	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37630925	NES08999274	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126773921 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			766 bp proximal
Gm75308	predicted gene, 75308			692 bp upstream
Rr564422	regulatory region 564422			328 bp proximal
Rr564423	regulatory region 564423			1054 bp proximal
Rr564424	regulatory region 564424			1087 bp proximal
Rr564425	regulatory region 564425			1224 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				Noncoding-Transcript-Variant
Tssr26084	transcription start site region 26084			95 bp upstream
Tssr26085	transcription start site region 26085			992 bp downstream
Tssr26086	transcription start site region 26086			1121 bp downstream
Tssr26087	transcription start site region 26087			1152 bp downstream
Tssr26088	transcription start site region 26088			1214 bp downstream
Tssr26089	transcription start site region 26089			1228 bp downstream
Tssr26090	transcription start site region 26090			1866 bp downstream