rs27435084 SNP Detail

Summary

• ID
  rs27435084
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126772893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACCAAGGGA ACCTATTACC AACTTTCCAA ACCTTAAAAA
  CAAAACAAAC AAACAACAAC AAGACTCTTA TTCCTCAGCT GGCTAGGGAT TTAGCTCAGT
  Y
  GAGCACTCGC CTACCATTTA TGAAGCCATT TGAGCACGGT GGTTCATGCC TACAATCCCC
  ACGCTACAGT CAGACAGTCA GACTCACTGT TATTCTTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37630926	NES08999307	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T	T	T	C	C		T	C	C	T		C
ss147514248	ENSMUSSNP2099149	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss320498560	CHEV_2_126756709	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27435084					SNP	C	C	T	C	T	C	T	T	T	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37630926	NES08999307	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126772893 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			1794 bp proximal
Gm75308	predicted gene, 75308			1720 bp upstream
Rr564422	regulatory region 564422			1356 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				Noncoding-Transcript-Variant
Tssr19974	transcription start site region 19974			1943 bp downstream
Tssr26084	transcription start site region 26084			928 bp downstream