rs27435535 SNP Detail

Summary

• ID
  rs27435535
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125573024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGGATC CATTCTACAA
  GGCCTTTTCT GTGTTTTCCA CTCCCTCCAC TAGACAGAGG CCTGGGATGA GGTGTGGCTG
  GAGGAGCCTC AGAATAGGTG ACAGGGACGG GGCCTGCAGC TTGCAGAGGC AGTGCAGGGC
  CCAGAGAAAA AGGCAGACCT GGTGGAAGTG CAAATGCTCA GGCATGGTGA CTCAGCCACG
  Y
  GTAAGCACTG TTCTGAGGCT GACCTCCACC AGCCGCTGTT AGAATCCCAT GAGCCCTTTC
  AGCTCTCTGA CTTCACACCG TAAGCCCCCC TTTCATTTAC ATACAAGTAC CTTATTGACG
  GGCACGAAAA CAAAACAGAT GAAAATTAAA TTCACCCACA TGCCAATTTA GACACAGTCC
  TTGATGACAT TTTAGTCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37633767	NES08997837	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27435535					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37633767	NES08997837	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125573024 () rs orientation: forward

Symbol	Name	Function Class
BC026863	cDNA sequence BC026863	1062 bp upstream
Cpgi12201	CpG island 12201	693 bp proximal
Rr397270	regulatory region 397270	643 bp upstream
Rr564273	regulatory region 564273	438 bp proximal