rs27435536 SNP Detail

Summary

• ID
  rs27435536
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125572873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGTTAGAG AGGCCCCTTA GTGCTGCCGG CCTAGGCCAG
  AGAACTTCAG GGGGAGGGAT CCATTCTACA AGGCCTTTTC TGTGTTTTCC ACTCCCTCCA
  S
  TAGACAGAGG CCTGGGATGA GGTGTGGCTG GAGGAGCCTC AGAATAGGTG ACAGGGACGG
  GGCCTGCAGC TTGCAGAGGC AGTGCAGGGC CCAGAGAAA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37633768	NES08997832	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	G	G	C	C	C	C	C
ss45371865	mCV22613870	ABI	CRAMUS_MOUSE	f	SNP	C	C						G
ss147486225	ENSMUSSNP169388	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27435536					SNP	C	C	C	C	C	C	G	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37633768	NES08997832	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125572873 () rs orientation: forward

Symbol	Name	Function Class
BC026863	cDNA sequence BC026863	1213 bp upstream
Cpgi12201	CpG island 12201	844 bp proximal
Rr397270	regulatory region 397270	794 bp upstream
Rr564273	regulatory region 564273	589 bp proximal