rs27435537 SNP Detail

Summary

• ID
  rs27435537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125572857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGATGGGC AAATGCCTGT
  AACCTCGCAC TCAGGAGGCT GAGAGGGGAA CTGTGAGTTC CTCCAGCTAA GGCCTGCCAC
  ATTACCTCCC CTAAAGTGGG CTTCTAGGTG AGAGAGAGAG TTAGAGAGGC CCCTTAGTGC
  TGCCGGCCTA GGCCAGAGAA CTTCAGGGGG AGGGATCCAT TCTACAAGGC CTTTTCTGTG
  Y
  TTTCCACTCC CTCCACTAGA CAGAGGCCTG GGATGAGGTG TGGCTGGAGG AGCCTCAGAA
  TAGGTGACAG GGACGGGGCC TGCAGCTTGC AGAGGCAGTG CAGGGCCCAG AGAAAAAGGC
  AGACCTGGTG GAAGTGCAAA TGCTCAGGCA TGGTGACTCA GCCACGTGTA AGCACTGTTC
  TGAGGCTGAC CTCCACCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37633769	NES08997830	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27435537					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37633769	NES08997830	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125572857 () rs orientation: forward

Symbol	Name	Function Class
BC026863	cDNA sequence BC026863	1229 bp upstream
Cpgi12201	CpG island 12201	860 bp proximal
Rr397270	regulatory region 397270	810 bp upstream
Rr564273	regulatory region 564273	605 bp proximal