rs27435540 SNP Detail

Summary

• ID
  rs27435540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125571769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCAGCATT CCAGAGTGTG AAGCTGCTAT TTCACTACCC
  TTTTGTCTCC ACAACCAACC TGTTACAGGA TGGTCACCAG CATCTTCCCA GTGTCAACTT
  R
  TACAAGAAGG CAGTTTGAGG ATGCATCTAA ACCCACCGTG AGAATCCACA TCTCCTTTTT
  CCCAGATAGG TTTTTAAGCG GCTTTTCAAA AATGCTCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37633772	NES08997901	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	A		G	A	G	G	G	G	A	G
ss45218130	mCV22613834	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					G		A
ss147486188	ENSMUSSNP1445320	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27435540					SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37633772	NES08997901	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125571769 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12201	CpG island 12201	1948 bp proximal
Rr397270	regulatory region 397270	1898 bp upstream
Rr564273	regulatory region 564273	1693 bp proximal