rs27435558 SNP Detail

Summary

• ID
  rs27435558
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125568960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTAGTCCA GGATACGTTT AAACTGGTTG TACTAAAGTA
  AAGGAAAGTA AGTTGTGCAG CCTGACTCCA GCTGGTGAGT GATGATGGCG CCGGACATAC
  R
  GCTGCCAGAC CCACTGCCAC CTGATGATCA GAAACCCCAC ATCTAGATGC TGGCCCTTGT
  TGAGACTGCA GGCTCATTGC TCCCTGGTGG TGGAAAGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37633790	NES08997946	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A	G	A	G		A	G	G	A		G
ss147486117	ENSMUSSNP1130781	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss320497846	CHEV_2_125552776	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27435558					SNP	G	A	G	A	G	A	G	A	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37633790	NES08997946	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125568960 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr70	DNA Segment, Chr 2, Derry C. Roopenian 70	1305 bp distal
D2Mit398	DNA segment, Chr 2, Massachusetts Institute of Technology 398	1302 bp distal
Rr564272	regulatory region 564272	1721 bp distal