rs27435562 SNP Detail

Summary

• ID
  rs27435562
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125568072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACTCTA ACAAGACCTC
  AGGATGCCGT TCTGCCTGTA GGCCTGAGTG ACCTAGAAGG CCCTCTTAGG CAGCTCTGCA
  TTGTGCTGAC CAGACCAGCA TGATAGGGCA CTCTGGGGGC TGCAGGCTGA GCTAGGTGGA
  CCAGCAAGCA TGACGCTGTG AGCTACTTCT CTGTCCTGGG AGCCTGGAAG ACATTCACTA
  K
  CACCCGCTGA AAAGCTGTCC CTCTGTCCAG CAGCCCTGGA GATGGCTGGC TAAGAAGGTA
  TATGGGGAGA AAAGGGCCAA TATATCGTCT CCCACTAGAA ACAGAAACAA AGACAACACT
  AAGTAATGGT CACTAGAGCT AGCCCACCAG GTAATGCCTG TGTGCCAGTA GTATTAACAA
  CTGTCTGCAC TGTGGCATAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37633794	NES08997992	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27435562					SNP	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37633794	NES08997992	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125568072 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr70	DNA Segment, Chr 2, Derry C. Roopenian 70	417 bp distal
D2Mit398	DNA segment, Chr 2, Massachusetts Institute of Technology 398	414 bp distal
Rr367290	regulatory region 367290	1414 bp downstream
Rr564272	regulatory region 564272	833 bp distal