rs27435564 SNP Detail

Summary

• ID
  rs27435564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125567933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAACTGCT AGAGTATACT
  ATGTCATCTT AGGCAACCAA AAAGGAAAAG TACCACAAAG TAAGGGACAC CAAGGAAGGA
  ACACTGTCTC AAGAAGCTAT TCCCAATGCT CGTCTGTGTC TGGGAAAGGT GGTGATGCTG
  AAAACTCTAA CAAGACCTCA GGATGCCGTT CTGCCTGTAG GCCTGAGTGA CCTAGAAGGC
  Y
  CTCTTAGGCA GCTCTGCATT GTGCTGACCA GACCAGCATG ATAGGGCACT CTGGGGGCTG
  CAGGCTGAGC TAGGTGGACC AGCAAGCATG ACGCTGTGAG CTACTTCTCT GTCCTGGGAG
  CCTGGAAGAC ATTCACTATC ACCCGCTGAA AAGCTGTCCC TCTGTCCAGC AGCCCTGGAG
  ATGGCTGGCT AAGAAGGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37633796	NES08997990	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27435564					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37633796	NES08997990	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125567933 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr70	DNA Segment, Chr 2, Derry C. Roopenian 70	278 bp distal
D2Mit398	DNA segment, Chr 2, Massachusetts Institute of Technology 398	275 bp distal
Rr367290	regulatory region 367290	1275 bp downstream
Rr564272	regulatory region 564272	694 bp distal
Shc4	SHC (Src homology 2 domain containing) family, member 4	1865 bp upstream