rs27435565 SNP Detail

Summary

• ID
  rs27435565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125567843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATACTTTT AAAATAATAA
  GATAAATCGT TAAAATAAAT AAGCAAATTA AAGGCCAATG GAACCAGGGT GTCTCCATTG
  AAGTAGTGTT CCCAACTGCT AGAGTATACT ATGTCATCTT AGGCAACCAA AAAGGAAAAG
  TACCACAAAG TAAGGGACAC CAAGGAAGGA ACACTGTCTC AAGAAGCTAT TCCCAATGCT
  Y
  GTCTGTGTCT GGGAAAGGTG GTGATGCTGA AAACTCTAAC AAGACCTCAG GATGCCGTTC
  TGCCTGTAGG CCTGAGTGAC CTAGAAGGCC CTCTTAGGCA GCTCTGCATT GTGCTGACCA
  GACCAGCATG ATAGGGCACT CTGGGGGCTG CAGGCTGAGC TAGGTGGACC AGCAAGCATG
  ACGCTGTGAG CTACTTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37633797	NES08997989	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27435565					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37633797	NES08997989	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125567843 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr70	DNA Segment, Chr 2, Derry C. Roopenian 70	188 bp distal
D2Mit398	DNA segment, Chr 2, Massachusetts Institute of Technology 398	185 bp distal
Rr367290	regulatory region 367290	1185 bp downstream
Rr564272	regulatory region 564272	604 bp distal
Shc4	SHC (Src homology 2 domain containing) family, member 4	1775 bp upstream