rs27435567 SNP Detail

Summary

• ID
  rs27435567
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125567283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGAACTC ATATACCCGG
  AACCTAGGGA GACAGGATCA GGGGAGTGGA AGGTGGGAGG AGGAGGGAGT AAGACTGAAA
  AAATCCGCTA GTACCTCTAC TGCTACGCAT GCTTCTCTTT CATCTCTGCC TTCTCCTCTG
  GGTCCCACCT TACCGTATGC CATGCCACAG TAACATCCCA CTACCTTGAG AGAAGTTCCT
  R
  TGAGTGGTAA TGGCCTTGTC TGTGAGTGGC AGCTAATGAA TGACGTGTGG GAGCATATGA
  AATAGCTACA GTCCCTGTAA AACATCCCCA CAATGCTCCG GGAGAGTACC TGCATCTCCG
  AAGCATCCTG GGCAGCATTT TTTAAAAGGT TGCTGGAGAG ATGGCTCAGT AGTTAAAAAC
  GTGTACTGCT CTTGCAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37633799	NES08998116	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27435567					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37633799	NES08998116	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125567283 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12200	CpG island 12200	1729 bp distal
D2Dcr70	DNA Segment, Chr 2, Derry C. Roopenian 70	273 bp proximal
D2Mit398	DNA segment, Chr 2, Massachusetts Institute of Technology 398	231 bp proximal
Rr367290	regulatory region 367290	625 bp downstream
Rr564270	regulatory region 564270	1486 bp distal
Rr564271	regulatory region 564271	1483 bp distal
Rr564272	regulatory region 564272	44 bp distal
Shc4	SHC (Src homology 2 domain containing) family, member 4	1215 bp upstream
Tssr26008	transcription start site region 26008	1826 bp upstream
Tssr26009	transcription start site region 26009	1672 bp upstream
Tssr26010	transcription start site region 26010	1640 bp upstream