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rs27435568 SNP Detail
Summary
  • ID
    rs27435568
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:125567188 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          AAATC CGCTAGTACC TCTACTGCTA
    Y
    GCATGCTTCT CTTTCATCTC TGCCT                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37633800 NES08998114 PERLEGEN MM_PANEL2 f SNP T C T C T C C C T C T T C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27435568 SNP T C T C T C C C T C T T C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37633800 NES08998114 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:125567188 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12200 CpG island 12200 1634 bp distal
D2Dcr70 DNA Segment, Chr 2, Derry C. Roopenian 70 368 bp proximal
D2Mit398 DNA segment, Chr 2, Massachusetts Institute of Technology 398 326 bp proximal
Rr367290 regulatory region 367290 530 bp downstream
Rr564270 regulatory region 564270 1391 bp distal
Rr564271 regulatory region 564271 1388 bp distal
Rr564272 regulatory region 564272 within coordinates
Shc4 SHC (Src homology 2 domain containing) family, member 4 1120 bp upstream
Tssr26008 transcription start site region 26008 1731 bp upstream
Tssr26009 transcription start site region 26009 1577 bp upstream
Tssr26010 transcription start site region 26010 1545 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory