TCGAGTGCTC AGGACTTAGC CTGAACTCCA GGGCCATCCA AACACAGGTT TGAATGAAAC CAGTGCAGGT GACTAGGAGA CAAAGGCGCC TCGCCGCCGC CAAGCTTTTG TGCTTAGGCT CAGAACGGCT TGTTAGTATC CTGCCTGACA ACTTTGTGAG CTTTTTCTAT CCACTGGGAA GGCCTTTTGT GGCGTCCTAT W CCTTCCTTTC TGACTTTCTT TTTGCACCTC CACATTTGGC AAACACGAAA GGAATGGCTA AATCAGAACT CATATACCCG GAACCTAGGG AGACAGGATC AGGGGAGTGG AAGGTGGGAG GAGGAGGGAG TAAGACTGAA AAAATCCGCT AGTACCTCTA CTGCTACGCA TGCTTCTCTT TCATCTCTGC CTTCTCCTCT W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37633802 | NES08998112 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | T |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs27435570 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37633802 | NES08998112 | PERLEGEN | MM_PANEL | f | SNP | A/T |
Location: Chr2:125567021 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi12200 | CpG island 12200 | 1467 bp distal | ||||||
D2Dcr70 | DNA Segment, Chr 2, Derry C. Roopenian 70 | 535 bp proximal | ||||||
D2Mit398 | DNA segment, Chr 2, Massachusetts Institute of Technology 398 | 493 bp proximal | ||||||
Rr367290 | regulatory region 367290 | 363 bp downstream | ||||||
Rr564270 | regulatory region 564270 | 1224 bp distal | ||||||
Rr564271 | regulatory region 564271 | 1221 bp distal | ||||||
Rr564272 | regulatory region 564272 | within coordinates | ||||||
Shc4 | SHC (Src homology 2 domain containing) family, member 4 | 953 bp upstream | ||||||
Tssr26008 | transcription start site region 26008 | 1564 bp upstream | ||||||
Tssr26009 | transcription start site region 26009 | 1410 bp upstream | ||||||
Tssr26010 | transcription start site region 26010 | 1378 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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