rs27435571 SNP Detail

Summary

• ID
  rs27435571
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125566620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATATGTT ACACAAACAA
  CTCTTGTTCA AAGCCTAGAT TCGTTTTTCT TAGAAACGTT TTTTTTTTTT TTAATTGATT
  GCCGCCCCAT CTTCTGTCTG ATACAATTTC CTGAGCCCAT CAAAGGCCCC GGGAAGACAA
  CCGTAAAGGC TGAGCCCACA GGAAGCCTGA GCCCCAGCTG GGCAGAGGAA ATGCAGGTTC
  W
  TTCAGGAGCT GAGAAGAGCG GACTGCTGAG ACCTTGGGGT GGGGGTGGGG TGAGAGTCTC
  CGGGAGGAAG CAGCTGAGGT TGCGTTTCTC TGTGAGCCTT GGCTCCAGTA CCTGAGACTA
  TTCATGATTT CGAATACTAA GGCAGCAGCC AAGAGAATCT GGGAAGAAGG CCACCTCACC
  TTCTCATTGA CCACGGGCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37633803	NES08998111	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	T	A	A		A	A	A		A	A	A	A		A
ss45220893	mCV22613600	ABI	CRAMUS_MOUSE	f	SNP		A	T					A		A
ss147486062	ENSMUSSNP4905776	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T							A
ss320497839	CHEV_2_125550436	CHEVERUD	SCREENING_POP	f	SNP												A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27435571					SNP	A	A	T	A	T	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37633803	NES08998111	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125566620 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12200	CpG island 12200	1066 bp distal
D2Dcr70	DNA Segment, Chr 2, Derry C. Roopenian 70	936 bp proximal
D2Mit398	DNA segment, Chr 2, Massachusetts Institute of Technology 398	894 bp proximal
Rr367290	regulatory region 367290	within coordinates
Rr564270	regulatory region 564270	823 bp distal
Rr564271	regulatory region 564271	820 bp distal
Rr564272	regulatory region 564272	178 bp proximal
Shc4	SHC (Src homology 2 domain containing) family, member 4	552 bp upstream
Tssr26008	transcription start site region 26008	1163 bp upstream
Tssr26009	transcription start site region 26009	1009 bp upstream
Tssr26010	transcription start site region 26010	977 bp upstream