rs27435573 SNP Detail

Summary

• ID
  rs27435573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125566058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTTTTCAG GAGGAGCCTG TGCACAGCAA AAGGCTGAGT
  TGAGCAGACG ATACCCAGGC TGTTGAAATT TTTATGAATG AACTTTGCCG AATGAATTTC
  Y
  CTCGTTGTGT GAGAGCTAAT AAATCTGTGA ATGGAGCCGA GAATAGCTGT AATTGACTGA
  CCCGTTTGGG GCGGCGCGGG GGTGGGGGTG TGGGGGGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37633805	NES08998109	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T		C	T	C	C	C	C	T	C
ss45290070	mCV22613588	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27435573					SNP	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37633805	NES08998109	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125566058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12200	CpG island 12200	504 bp distal
D2Dcr70	DNA Segment, Chr 2, Derry C. Roopenian 70	1498 bp proximal
D2Mit398	DNA segment, Chr 2, Massachusetts Institute of Technology 398	1456 bp proximal
Rr367290	regulatory region 367290	491 bp upstream
Rr564270	regulatory region 564270	261 bp distal
Rr564271	regulatory region 564271	258 bp distal
Rr564272	regulatory region 564272	740 bp proximal
Shc4	SHC (Src homology 2 domain containing) family, member 4	within coordinates
Tssr26008	transcription start site region 26008	601 bp upstream
Tssr26009	transcription start site region 26009	447 bp upstream
Tssr26010	transcription start site region 26010	415 bp upstream