rs27438680 SNP Detail

Summary

• ID
  rs27438680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119069995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGACAACAT CCCTTTAGGG TAAGCCTAGG CCTCACTTCA
  GGGGCCTACT CCACAAGTCC TACTGTTTGA CATAGGACCA CCTCCTTAGT AGAACAGGGT
  R
  GAAACCCAGC AGCAAACAGA ACCAGAGTGT GGAGTGCAGG GAGCAGGACA CATAGGGCCA
  GTGCGACAGA CCCTTTCTCT CCAGGCTTCT TCCTACTAGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37650906	NES09023959	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27438680					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650906	NES09023959	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119069995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12109	CpG island 12109	1183 bp distal
Rr563447	regulatory region 563447	1951 bp distal
Rr563449	regulatory region 563449	1872 bp distal
Rr563450	regulatory region 563450	1416 bp distal
Rr563451	regulatory region 563451	within coordinates
Spint1	serine protease inhibitor, Kunitz type 1	Intron
Tssr19614	transcription start site region 19614	1990 bp downstream
Tssr19615	transcription start site region 19615	1962 bp downstream
Tssr19616	transcription start site region 19616	1869 bp downstream
Tssr19617	transcription start site region 19617	1865 bp downstream
Tssr19618	transcription start site region 19618	1804 bp downstream
Tssr19619	transcription start site region 19619	1774 bp downstream
Tssr19620	transcription start site region 19620	1117 bp upstream