rs27438681 SNP Detail

Summary

• ID
  rs27438681
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119069937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTA AGCCTAGGCC TCACTTCAGG
  R
  GCCTACTCCA CAAGTCCTAC TGTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37650907	NES09023958	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A	A	G		A	A	A	G		A
ss147326886	ENSMUSSNP1434162	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss320474351	CHEV_2_119065192	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27438681					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650907	NES09023958	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119069937 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12109	CpG island 12109	1125 bp distal
Rr563447	regulatory region 563447	1893 bp distal
Rr563449	regulatory region 563449	1814 bp distal
Rr563450	regulatory region 563450	1358 bp distal
Rr563451	regulatory region 563451	within coordinates
Spint1	serine protease inhibitor, Kunitz type 1	Intron
Tssr19612	transcription start site region 19612	1982 bp downstream
Tssr19613	transcription start site region 19613	1948 bp downstream
Tssr19614	transcription start site region 19614	1932 bp downstream
Tssr19615	transcription start site region 19615	1904 bp downstream
Tssr19616	transcription start site region 19616	1811 bp downstream
Tssr19617	transcription start site region 19617	1807 bp downstream
Tssr19618	transcription start site region 19618	1746 bp downstream
Tssr19619	transcription start site region 19619	1716 bp downstream
Tssr19620	transcription start site region 19620	1175 bp upstream