rs27438683 SNP Detail

Summary

• ID
  rs27438683
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119069596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGG AGTGGGTCAC AGTTATAACT
  R
  ATGCTGGCTC TCTTAACATT TTACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37650909	NES09024021	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	G	A		G	G	G	G		G
ss45254275	mCV24414190	ABI	CRAMUS_MOUSE	f	SNP		G					A	G
ss147326876	ENSMUSSNP5729884	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss320474349	CHEV_2_119064851	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27438683					SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650909	NES09024021	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119069596 () rs orientation: forward

Symbol	Name	Function Class
9130007G19Rik	RIKEN cDNA 9130007G19 gene	1840 bp upstream
Cpgi12109	CpG island 12109	784 bp distal
Rr563445	regulatory region 563445	1851 bp distal
Rr563447	regulatory region 563447	1552 bp distal
Rr563448	regulatory region 563448	1715 bp distal
Rr563449	regulatory region 563449	1473 bp distal
Rr563450	regulatory region 563450	1017 bp distal
Rr563451	regulatory region 563451	277 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	Intron
Tssr19609	transcription start site region 19609	1898 bp downstream
Tssr19610	transcription start site region 19610	1741 bp downstream
Tssr19611	transcription start site region 19611	1695 bp downstream
Tssr19612	transcription start site region 19612	1641 bp downstream
Tssr19613	transcription start site region 19613	1607 bp downstream
Tssr19614	transcription start site region 19614	1591 bp downstream
Tssr19615	transcription start site region 19615	1563 bp downstream
Tssr19616	transcription start site region 19616	1470 bp downstream
Tssr19617	transcription start site region 19617	1466 bp downstream
Tssr19618	transcription start site region 19618	1405 bp downstream
Tssr19619	transcription start site region 19619	1375 bp downstream
Tssr19620	transcription start site region 19620	1516 bp upstream