rs27438685 SNP Detail

Summary

• ID
  rs27438685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119069212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTCCGGTG GCTGCATAAG GTACAGGTTA GTGTCTCTGC
  CCTGGGAATA GATTGGCCTT TTGCAGGTGG GACCAATGAT ATAACCAGGC CTCCAGACAA
  Y
  ACAGGACAAA CTCAGGCAAA GGTTTTCCTG TGGGAGAGGG ACTGTGCTGT GGGTCCAGTC
  TCCTAGACAC TCTCTGGTGA GGGGTGAGGA GGGCCACTGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37650911	NES09024019	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27438685					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650911	NES09024019	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119069212 () rs orientation: forward

Symbol	Name	Function Class
9130007G19Rik	RIKEN cDNA 9130007G19 gene	1456 bp upstream
Cpgi12109	CpG island 12109	400 bp distal
Rr563445	regulatory region 563445	1467 bp distal
Rr563446	regulatory region 563446	1655 bp distal
Rr563447	regulatory region 563447	1168 bp distal
Rr563448	regulatory region 563448	1331 bp distal
Rr563449	regulatory region 563449	1089 bp distal
Rr563450	regulatory region 563450	633 bp distal
Rr563451	regulatory region 563451	661 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	Intron
Tssr19609	transcription start site region 19609	1514 bp downstream
Tssr19610	transcription start site region 19610	1357 bp downstream
Tssr19611	transcription start site region 19611	1311 bp downstream
Tssr19612	transcription start site region 19612	1257 bp downstream
Tssr19613	transcription start site region 19613	1223 bp downstream
Tssr19614	transcription start site region 19614	1207 bp downstream
Tssr19615	transcription start site region 19615	1179 bp downstream
Tssr19616	transcription start site region 19616	1086 bp downstream
Tssr19617	transcription start site region 19617	1082 bp downstream
Tssr19618	transcription start site region 19618	1021 bp downstream
Tssr19619	transcription start site region 19619	991 bp downstream
Tssr19620	transcription start site region 19620	1900 bp upstream