rs27438689 SNP Detail

Summary

• ID
  rs27438689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119068510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACCAGCGG GGTGCCGTCC TTTGTGCTGG ACACCGAAGC
  CTCAGTCAGC AACGGGGCCA CCTTCCTGGG TTCCCCGACG GCGCGCCGCG GCTGGGACTG
  Y
  GTGCGCTCCT GCTGCACCAC TCAGAACTGC AACCTGGCGC TGGTGGAGCT GCAGCCAGAC
  GGCGGCGAGG ACGCCATCTC TGCCTGCTTC CTCATGAACT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37650916	NES09024014	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27438689					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650916	NES09024014	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119068510 () rs orientation: forward

Symbol	Name	Function Class
9130007G19Rik	RIKEN cDNA 9130007G19 gene	754 bp upstream
Cpgi12109	CpG island 12109	within coordinates
Rr563445	regulatory region 563445	765 bp distal
Rr563446	regulatory region 563446	953 bp distal
Rr563447	regulatory region 563447	466 bp distal
Rr563448	regulatory region 563448	629 bp distal
Rr563449	regulatory region 563449	387 bp distal
Rr563450	regulatory region 563450	48 bp proximal
Rr563451	regulatory region 563451	1363 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	Coding-Synonymous
Tssr19609	transcription start site region 19609	812 bp downstream
Tssr19610	transcription start site region 19610	655 bp downstream
Tssr19611	transcription start site region 19611	609 bp downstream
Tssr19612	transcription start site region 19612	555 bp downstream
Tssr19613	transcription start site region 19613	521 bp downstream
Tssr19614	transcription start site region 19614	505 bp downstream
Tssr19615	transcription start site region 19615	477 bp downstream
Tssr19616	transcription start site region 19616	384 bp downstream
Tssr19617	transcription start site region 19617	380 bp downstream
Tssr19618	transcription start site region 19618	319 bp downstream
Tssr19619	transcription start site region 19619	289 bp downstream