rs27438691 SNP Detail

Summary

• ID
  rs27438691
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119067889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGG AGGAGGCAGC CAATCTTCCG
  Y
  GCAGCCAGAG CCGGGCGGAA GCCGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37650918	NES09024012	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T		C	C	C	T		C
ss320474344	CHEV_2_119063144	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27438691					SNP	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650918	NES09024012	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119067889 () rs orientation: forward

Symbol	Name	Function Class
9130007G19Rik	RIKEN cDNA 9130007G19 gene	133 bp upstream
Cpgi12109	CpG island 12109	within coordinates
Rr563445	regulatory region 563445	144 bp distal
Rr563446	regulatory region 563446	332 bp distal
Rr563447	regulatory region 563447	within coordinates
Rr563448	regulatory region 563448	8 bp distal
Rr563449	regulatory region 563449	213 bp proximal
Rr563450	regulatory region 563450	669 bp proximal
Rr563451	regulatory region 563451	1984 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	mRNA-UTR
Tssr19609	transcription start site region 19609	191 bp downstream
Tssr19610	transcription start site region 19610	34 bp downstream
Tssr19611	transcription start site region 19611	within coordinates
Tssr19612	transcription start site region 19612	45 bp upstream
Tssr19613	transcription start site region 19613	74 bp upstream
Tssr19614	transcription start site region 19614	103 bp upstream
Tssr19615	transcription start site region 19615	123 bp upstream
Tssr19616	transcription start site region 19616	226 bp upstream
Tssr19617	transcription start site region 19617	238 bp upstream
Tssr19618	transcription start site region 19618	270 bp upstream
Tssr19619	transcription start site region 19619	317 bp upstream