rs27438693 SNP Detail

Summary

• ID
  rs27438693
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119067624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA CCCAACGAGT GGCTGGACTC
  S
  GTGGAGCCAG GGTAGAGCCG CCTCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37650920	NES09024010	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	G	C		G	G	C		G
ss45317177	mCV24413907	ABI	CRAMUS_MOUSE	f	SNP		G	G					C	G
ss147326846	ENSMUSSNP273449	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss320474342	CHEV_2_119062879	CHEVERUD	SCREENING_POP	f	SNP												C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27438693					SNP	G	G	G	G	G	G	G	C	G	G	C	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650920	NES09024010	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119067624 () rs orientation: forward

Symbol	Name	Function Class
9130007G19Rik	RIKEN cDNA 9130007G19 gene	within coordinates
Cpgi12109	CpG island 12109	within coordinates
Rr563445	regulatory region 563445	within coordinates
Rr563446	regulatory region 563446	67 bp distal
Rr563447	regulatory region 563447	122 bp proximal
Rr563448	regulatory region 563448	236 bp proximal
Rr563449	regulatory region 563449	478 bp proximal
Rr563450	regulatory region 563450	934 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	217 bp upstream
Tssr19609	transcription start site region 19609	62 bp upstream
Tssr19610	transcription start site region 19610	208 bp upstream
Tssr19611	transcription start site region 19611	247 bp upstream
Tssr19612	transcription start site region 19612	310 bp upstream
Tssr19613	transcription start site region 19613	339 bp upstream
Tssr19614	transcription start site region 19614	368 bp upstream
Tssr19615	transcription start site region 19615	388 bp upstream
Tssr19616	transcription start site region 19616	491 bp upstream
Tssr19617	transcription start site region 19617	503 bp upstream
Tssr19618	transcription start site region 19618	535 bp upstream
Tssr19619	transcription start site region 19619	582 bp upstream