rs27438696 SNP Detail

Summary

• ID
  rs27438696
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119067199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGAGATT AACTGAACCC
  TTCAGAGAGC TGGAGCCTCC AGGTGTCCAA ACAGGGAATT TATGTGGAAG AGAGTGGTCA
  ACTACTCACT GGGAGTTCCC CTTGGGATGG GAGAGTAAAC CTGAGATTCA GGGAAGGGGA
  CAATTTACCA ACAAAAGATG AAGAGTTCAA AAGGAAATGT TTACAAGAAT GAGGGAGAGG
  M
  GCAAACAAAA GGGAATGCAC TCCTGTGGGT GAAACAGGGA AGCCAGGATA CCAGGAATCA
  CCTGTTGGTC CACTCTCGCA GAAGGAAGGG CTGTCCTGAG CTGCATCAGT GAAGCACGAA
  TCCCAGGATC TGGTTTACAC AAACGCAGCC TATCCAACTT TGGGGTTCTC TTCTTACTGG
  AAAACTGGAA ATGATGTCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37650923	NES09024007	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27438696					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650923	NES09024007	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119067199 () rs orientation: forward

Symbol	Name	Function Class
9130007G19Rik	RIKEN cDNA 9130007G19 gene	within coordinates
Cpgi12109	CpG island 12109	48 bp proximal
Rr563445	regulatory region 563445	within coordinates
Rr563446	regulatory region 563446	337 bp proximal
Rr563447	regulatory region 563447	547 bp proximal
Rr563448	regulatory region 563448	661 bp proximal
Rr563449	regulatory region 563449	903 bp proximal
Rr563450	regulatory region 563450	1359 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	642 bp upstream
Tssr19609	transcription start site region 19609	487 bp upstream
Tssr19610	transcription start site region 19610	633 bp upstream
Tssr19611	transcription start site region 19611	672 bp upstream
Tssr19612	transcription start site region 19612	735 bp upstream
Tssr19613	transcription start site region 19613	764 bp upstream
Tssr19614	transcription start site region 19614	793 bp upstream
Tssr19615	transcription start site region 19615	813 bp upstream
Tssr19616	transcription start site region 19616	916 bp upstream
Tssr19617	transcription start site region 19617	928 bp upstream
Tssr19618	transcription start site region 19618	960 bp upstream
Tssr19619	transcription start site region 19619	1007 bp upstream