rs27438698 SNP Detail

Summary

• ID
  rs27438698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119066998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGG TATGAAGGTG TTCCCTGTTG
  Y
  GTGGGAGATT AACTGAACCC TTCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss37650925	NES09024005	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T	T	C		T	T	T
ss45321592	mCV24413894	ABI	CRAMUS_MOUSE	f	SNP		T					C	T
ss147326825	ENSMUSSNP6074692	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss320474339	CHEV_2_119062253	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs27438698					SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650925	NES09024005	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119066998 () rs orientation: forward

Symbol	Name	Function Class
9130007G19Rik	RIKEN cDNA 9130007G19 gene	within coordinates
Cpgi12109	CpG island 12109	249 bp proximal
Rr563445	regulatory region 563445	72 bp proximal
Rr563446	regulatory region 563446	538 bp proximal
Rr563447	regulatory region 563447	748 bp proximal
Rr563448	regulatory region 563448	862 bp proximal
Rr563449	regulatory region 563449	1104 bp proximal
Rr563450	regulatory region 563450	1560 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	843 bp upstream
Tssr19609	transcription start site region 19609	688 bp upstream
Tssr19610	transcription start site region 19610	834 bp upstream
Tssr19611	transcription start site region 19611	873 bp upstream
Tssr19612	transcription start site region 19612	936 bp upstream
Tssr19613	transcription start site region 19613	965 bp upstream
Tssr19614	transcription start site region 19614	994 bp upstream
Tssr19615	transcription start site region 19615	1014 bp upstream
Tssr19616	transcription start site region 19616	1117 bp upstream
Tssr19617	transcription start site region 19617	1129 bp upstream
Tssr19618	transcription start site region 19618	1161 bp upstream
Tssr19619	transcription start site region 19619	1208 bp upstream