rs27438703 SNP Detail

Summary

• ID
  rs27438703
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119065918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCCTTCT ATCAGATGCT
  TGGATTATAA GCATGTATCA CCACACCCAG CTTTAAATAT AGGTCTTTTT AATATCATGT
  ACACAGTGAA TATAATCATA AACTTCTGGC AATGTGGTAT TGTGATAAGG TGGTACTCTC
  TTGTGGTAGT GTTCTCTTAG GTATAAGCTA TTTGGGAAGG CAGAAATCAA ACTGTGACAA
  M
  GTTCTTTCTT CCCAGGAAAT GCACAATCAT GTTTCTTCCC CAGCATACCA TGATGGGCAT
  CACTATGCCA GTGGCTGTGG AACATCAGAA GATCCAGAGA GGGCCTGACA CCCACGTGTT
  TCCGCTCCCA GTGTCCGGAA TGTGAGTGGC TGGAGGGTTT GCAATCAGTG AAGGCAGGTC
  ATCCTTGGCT CCAAGATCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37650930	NES09024050	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C	C		A	A	A	A	C	C	A	C
ss45347618	mCV24413870	ABI	CRAMUS_MOUSE	f	SNP		C	A					A	A
ss147326796	ENSMUSSNP4429324	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27438703					SNP	C	C	A	A	A	C	C	A	A	A	A	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650930	NES09024050	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119065918 () rs orientation: forward

Symbol	Name	Function Class
9130007G19Rik	RIKEN cDNA 9130007G19 gene	within coordinates
Cpgi12109	CpG island 12109	1329 bp proximal
Rr563445	regulatory region 563445	1152 bp proximal
Rr563446	regulatory region 563446	1618 bp proximal
Rr563447	regulatory region 563447	1828 bp proximal
Rr563448	regulatory region 563448	1942 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	1923 bp upstream
Tssr19609	transcription start site region 19609	1768 bp upstream
Tssr19610	transcription start site region 19610	1914 bp upstream
Tssr19611	transcription start site region 19611	1953 bp upstream