rs27439676 SNP Detail

Summary

• ID
  rs27439676
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121268189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTATTAGCTA TCTACAACGA GAAGCTACAA ACCCCCCTAT
  AATTCAAGAA GAAAAACCTA AGAAGAAGAA GAAGGCACAA GAGGACCTCT AAAGCAACAG
  S
  CAAATGCACC ACTTTATAAA AGGACTCTTA CACCAGAGAA GGCAAAACCA GAGAGGACAG
  AATGGATATA CTCTGAATCC TGTTAAATTT TCTCTAAACT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37645698	NES09018577	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27439676					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645698	NES09018577	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121268189 () rs orientation: forward

Symbol	Name	Function Class
Ell3	elongation factor RNA polymerase II-like 3	1319 bp downstream
Pdia3	protein disulfide isomerase associated 3	within coordinates
Tssr19767	transcription start site region 19767	1786 bp downstream
Tssr19768	transcription start site region 19768	1344 bp downstream
Tssr19769	transcription start site region 19769	62 bp downstream
Tssr19770	transcription start site region 19770	197 bp upstream