rs27439678 SNP Detail

Summary

• ID
  rs27439678
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121266241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCAAGTAC CTGTTAGTGA AAGCTTTACC AGGTTGGTTT
  CTAACTCTGA AATCTGTCTG ATTTTGCTTC TGAAGAGTTA GGATAAAGGC ATGGGCCACT
  W
  GATCTAGGTC GGTAGTAAAT ACTTTGGCTA GCCTAGAACT TGTGACAGTC CAGCTTCTGT
  TTCCAAGTGT AGTAGTCAGA GCATGTTCTC AGGCATGTTT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss37645700	NES09018591	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs27439678					SNP	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645700	NES09018591	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121266241 () rs orientation: forward

Symbol	Name	Function Class
Pdia3	protein disulfide isomerase associated 3	within coordinates
Rr563821	regulatory region 563821	619 bp distal
Rr563822	regulatory region 563822	698 bp distal
Tssr19766	transcription start site region 19766	1749 bp downstream
Tssr19767	transcription start site region 19767	151 bp upstream
Tssr19768	transcription start site region 19768	595 bp upstream
Tssr19769	transcription start site region 19769	1847 bp upstream