rs27439679 SNP Detail

Summary

• ID
  rs27439679
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121265600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA TACCAGGCTC ATTCTACTTC
  R
  TGGTTACAAA TATCTGGGAT CTTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37645701	NES09018626	PERLEGEN	MM_PANEL2	f	SNP			G	G		G	G		A		G	A		G
ss45240284	mCV22586074	ABI	CRAMUS_MOUSE	f	SNP	G	G			A	G
ss147386044	ENSMUSSNP2668915	ENSEMBL	ENSEMBL_Sanger	f	SNP		G				G				A
ss320483152	CHEV_2_121260855	CHEVERUD	SCREENING_POP	f	SNP								A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27439679					SNP	G	G	G	G	A	G	G	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645701	NES09018626	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121265600 () rs orientation: forward

Symbol	Name	Function Class
Pdia3	protein disulfide isomerase associated 3	Intron
Rr563821	regulatory region 563821	within coordinates
Rr563822	regulatory region 563822	57 bp distal
Tssr19765	transcription start site region 19765	1582 bp downstream
Tssr19766	transcription start site region 19766	1108 bp downstream
Tssr19767	transcription start site region 19767	792 bp upstream
Tssr19768	transcription start site region 19768	1236 bp upstream