rs27439680 SNP Detail

Summary

• ID
  rs27439680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121265320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTGTGAG GGTAAGTTGG
  ATCAAGGGAA ATAACAACGT GTTGAGGAAT GTTGTGATAC AAGTTGAGGT GATTTCAGTC
  CAGAACAGTT AGAGCTTGTG GGTTTATTTT CCAGCTTCCT TGTGACTAGT GAGTCTCCTG
  TGTTTTCTAG GTTGTGGTAG CAGAGAATTT TGATGACATA GTGAATGAAG AAGATAAGGA
  Y
  GTGCTGATTG AATTTTACGC CCCTTGGTGT GGCCACTGTA AGAATCTGGA ACCCAAGTAT
  AAAGAGCTGG GAGAAAAAGT AAGTCTAAAT CCTCTTCTGA ATATGAGTTT GAGCTGGAAG
  TTTATATACA TATTAAGGGT AGACTTCATT AGTTACTATA CTGTTATTTT TTTCCCCAAC
  TATTGTTTAC ACACTTGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37645702	NES09018625	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27439680					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645702	NES09018625	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121265320 () rs orientation: forward

Symbol	Name	Function Class
Pdia3	protein disulfide isomerase associated 3	within coordinates
Rr563821	regulatory region 563821	97 bp proximal
Rr563822	regulatory region 563822	202 bp proximal
Tssr19765	transcription start site region 19765	1302 bp downstream
Tssr19766	transcription start site region 19766	828 bp downstream
Tssr19767	transcription start site region 19767	1072 bp upstream
Tssr19768	transcription start site region 19768	1516 bp upstream