rs27439868 SNP Detail

Summary

• ID
  rs27439868
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121127309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGCAAA GATAAAGGGG
  AAAAAAAACC CGGCAATTCC CTTCATTGGA AGAGCTGGGG GGCAGAAGAG AGAAACCAGG
  CTTCTCCCAG GATAAGGAGC GATGTAATGG ACTAGCTCCC CAGGAGTGGG GCTGGGGGTC
  CTGTGTCAGG CCAGGAAGTG GGGTCAAAGG TCTTGTGAGG ATACACTGGG GACCGTGAAG
  Y
  TGCTGGAGTA GGGAGATGGT AGCTGGAGAG GACGTGTCTT TCTGTTCTAC CTAGATTGAA
  GTGTGACCTT GTTTGTGATG GGGGAGTCCT GGCTCTTCTA AGTCTGACTT AAGACTGGCA
  GAGGATGGAG ATAGCCCAGG CTGCGTAAGC CCTGCTCCTG CCTGCCTGTG CCAAAGTGTC
  CCTCCACTCC CAAGTTCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37645893	NES09021313	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27439868					SNP	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645893	NES09021313	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121127309 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D2Dcr65	DNA Segment, Chr 2, Derry C. Roopenian 65			788 bp proximal
D2Mit445	DNA Segment, Chr 2, Massachusetts Institute of Technology 445			785 bp proximal
Gm14978	predicted gene 14978			820 bp upstream
Map1a	microtubule-associated protein 1 A			Intron
				Noncoding-Transcript-Variant
Rr373768	regulatory region 373768			1530 bp downstream
Rr563799	regulatory region 563799			1364 bp distal
Rr563800	regulatory region 563800			831 bp distal
Rr563801	regulatory region 563801			330 bp distal
Rr563802	regulatory region 563802			678 bp proximal
Tssr19740	transcription start site region 19740			1342 bp downstream
Tssr19741	transcription start site region 19741			1764 bp upstream