rs27439869 SNP Detail

Summary

• ID
  rs27439869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121125256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG AAACCTTCCT TACCCTTCCA
  Y
  GTCTGCCTCC TAACAGCCAG TACTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37645895	NES09021311	PERLEGEN	MM_PANEL2	f	SNP	T			T				C	C	T		T
ss45243046	mCV23082202	ABI	CRAMUS_MOUSE	f	SNP		T	T		C	T
ss147383119	ENSMUSSNP63892	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				T
ss320482559	CHEV_2_121120511	CHEVERUD	SCREENING_POP	f	SNP							C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27439869					SNP	T	T	T	T	C	T	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645895	NES09021311	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121125256 () rs orientation: forward

Symbol	Name	Function Class
Gm14978	predicted gene 14978	within coordinates
Map1a	microtubule-associated protein 1 A	Intron
Rr373768	regulatory region 373768	within coordinates
Rr563798	regulatory region 563798	1939 bp distal
Rr563799	regulatory region 563799	189 bp proximal
Rr563800	regulatory region 563800	690 bp proximal
Rr563801	regulatory region 563801	1223 bp proximal
Tssr19740	transcription start site region 19740	662 bp upstream