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rs27439950 SNP Detail
Summary
  • ID
    rs27439950
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:121054419 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          ACAGC AGCACAGGCT AACTCATCTC
    R
    ACCGTTTTAT TTCATTTCAG ATTTC                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
DBA/2J
KK/HlJ
LG/J
MOLF/EiJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss37645978 NES09022979 PERLEGEN MM_PANEL2 f SNP G G G G G G G G A G
ss147382001 ENSMUSSNP3801982 ENSEMBL ENSEMBL_Sanger f SNP G G G
ss320482331 CHEV_2_121049674 CHEVERUD SCREENING_POP f SNP A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
DBA/2J
KK/HlJ
LG/J
MOLF/EiJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs27439950 SNP G G G G G G G G A G G A G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37645978 NES09022979 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:121054419 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr373765 regulatory region 373765 1993 bp downstream
Rr563789 regulatory region 563789 569 bp distal
Rr563790 regulatory region 563790 698 bp distal
Trp53bp1 transformation related protein 53 binding protein 1 Intron
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory

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